PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G05080.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 406aa    MW: 45800.1 Da    PI: 8.3697
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G05080.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.6e-1731111995
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  ONIVA08G05080.2  31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111
                      5556788********999888..5558***************..*********************************99999..544 PP

2B342.11.5e-133194021099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ + l++ +++++++ ++   +kt++  ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  ONIVA08G05080.2 319 SGRISSLSIANRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 402
                      5566789*******888433...34788.56799*******..77777777889*********************9998888****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-2020114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-2120114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71623116IPR003340B3 DNA binding domain
CDDcd100172.23E-1724114No hitNo description
SMARTSM010199.8E-826116IPR003340B3 DNA binding domain
PfamPF023621.4E-1434109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16303403IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-14304403IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-14307401No hitNo description
SMARTSM010190.0014309403IPR003340B3 DNA binding domain
PROSITE profilePS508639.432310403IPR003340B3 DNA binding domain
PfamPF023626.9E-12317402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC  180
MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV  240
QRGNSSKGNM TTMSSSSMSS GYSLSSKDQD CRVGVIPDPI IGQKTILSRV QVNVVKRKIQ  300
NIGSQIPIFV SVIGKNNASG RISSLSIANR YVDNYLQDEK TIRLSRLGDK WNIRLSDSSG  360
NRRMVGGCRK FAEDNDVGVG DICLFELLKN HKCTMKVHII RAKDIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648704.10.0PREDICTED: B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0PREDICTED: B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0PREDICTED: B3 domain-containing protein Os08g0324300
RefseqXP_015648707.10.0PREDICTED: B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D90.0Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A0E0I7Z30.0A0A0E0I7Z3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QHC30.0A0A0E0QHC3_ORYRU; Uncharacterized protein
STRINGBGIOSGA027192-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein